fix test

tests/ra_aid/test_show_thoughts.py

@@ -17,11 +17,9 @@ def test_show_thoughts_flag():
     assert args.show_thoughts is True
 
 
-@pytest.fixture(autouse=True)
+@pytest.fixture
 def mock_config_repository():
     """Mock the ConfigRepository to avoid database operations during tests"""
-    with patch('ra_aid.database.repositories.config_repository.config_repo_var') as mock_repo_var:
-        # Setup a mock repository
     mock_repo = MagicMock()
     
     # Create a dictionary to simulate config
@@ -47,37 +45,74 @@ def mock_config_repository():
         return config.copy()
     mock_repo.get_all.side_effect = get_all_config
     
-        # Make the mock context var return our mock repo
-        mock_repo_var.get.return_value = mock_repo
-        
-        yield mock_repo
+    return mock_repo
 
 
 def test_show_thoughts_config(mock_config_repository):
-    """Test that the show_thoughts flag is correctly stored in config."""
+    """Test that the --show-thoughts flag is correctly stored in config."""
     import sys
-    from unittest.mock import patch
     
-    from ra_aid.__main__ import main
+    # Create a mock parse_arguments function
+    def mock_parse_arguments(args=None):
+        # Create a mock arguments object with controlled values
+        mock_args = MagicMock()
+        mock_args.show_thoughts = "--show-thoughts" in sys.argv
+        # Explicitly set research_only and chat to False to avoid sys.exit(1)
+        mock_args.research_only = False
+        mock_args.chat = False
+        # Set message to a default value to avoid sys.exit(1) for missing message
+        mock_args.message = "test message"
+        mock_args.wipe_project_memory = False
+        mock_args.webui = False
+        return mock_args
     
-    # Reset mocks
-    mock_config_repository.set.reset_mock()
-    
-    # For testing, we need to patch ConfigRepositoryManager.__enter__ to return our mock
-    with patch('ra_aid.database.repositories.config_repository.ConfigRepositoryManager.__enter__', return_value=mock_config_repository):
     # Test with --show-thoughts flag
-        with patch.object(sys, "argv", ["ra-aid", "-m", "test message", "--show-thoughts"]):
-            with patch("ra_aid.__main__.run_research_agent", return_value=None):
+    with patch.object(sys, "argv", ["ra-aid", "--show-thoughts"]):
+        with patch("ra_aid.__main__.parse_arguments", side_effect=mock_parse_arguments):
+            # Mock ConfigRepositoryManager to return our mock
+            with patch('ra_aid.database.repositories.config_repository.ConfigRepositoryManager.__enter__',
+                       return_value=mock_config_repository):
+                # Mock the required dependencies to prevent actual execution
+                with patch("ra_aid.__main__.setup_logging"), \
+                     patch("ra_aid.__main__.DatabaseManager"), \
+                     patch("ra_aid.__main__.ensure_migrations_applied"), \
+                     patch("ra_aid.__main__.check_dependencies"), \
+                     patch("ra_aid.__main__.validate_environment", return_value=(True, [], True, [])), \
+                     patch("ra_aid.__main__.build_status"), \
+                     patch("ra_aid.__main__.console.print"), \
+                     patch("ra_aid.__main__.initialize_llm"), \
+                     patch("ra_aid.__main__.run_research_agent"):
+                    
+                    # Run the main function
+                    from ra_aid.__main__ import main
                     main()
-                # Verify the show_thoughts flag is set to True in config
+                    
+                    # Verify that show_thoughts was set to True in config
                     mock_config_repository.set.assert_any_call("show_thoughts", True)
     
-        # Reset mocks
+    # Reset mock for second test
     mock_config_repository.set.reset_mock()
     
-        # Test without --show-thoughts flag (default: False)
-        with patch.object(sys, "argv", ["ra-aid", "-m", "test message"]):
-            with patch("ra_aid.__main__.run_research_agent", return_value=None):
+    # Test without --show-thoughts flag
+    with patch.object(sys, "argv", ["ra-aid"]):
+        with patch("ra_aid.__main__.parse_arguments", side_effect=mock_parse_arguments):
+            # Mock ConfigRepositoryManager to return our mock
+            with patch('ra_aid.database.repositories.config_repository.ConfigRepositoryManager.__enter__',
+                       return_value=mock_config_repository):
+                # Mock the required dependencies to prevent actual execution
+                with patch("ra_aid.__main__.setup_logging"), \
+                     patch("ra_aid.__main__.DatabaseManager"), \
+                     patch("ra_aid.__main__.ensure_migrations_applied"), \
+                     patch("ra_aid.__main__.check_dependencies"), \
+                     patch("ra_aid.__main__.validate_environment", return_value=(True, [], True, [])), \
+                     patch("ra_aid.__main__.build_status"), \
+                     patch("ra_aid.__main__.console.print"), \
+                     patch("ra_aid.__main__.initialize_llm"), \
+                     patch("ra_aid.__main__.run_research_agent"):
+                    
+                    # Run the main function
+                    from ra_aid.__main__ import main
                     main()
-                # Verify the show_thoughts flag is set to False in config
+                    
+                    # Verify that show_thoughts was set to False in config
                     mock_config_repository.set.assert_any_call("show_thoughts", False)